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HPC CLUSTERS IN USE

The largest use of HPC technologies at the university has been through the development of over 35 departmental clusters. These clusters are typically comprised of commodity PCs (low cost) organized in a Beowulf-style HPC cluster. These clusters operate in serial (batch) and/or parallel modes. Generally, these are not centrally available resources, but developed to support group/department level research.

Below is a table of clusters currently in operation at the university (data is from 2005). This demonstrates the composition and use of HPC clusters at Rutgers.

BioMaPS 
CPUs: 36
Purpose: BioMaPS HPC Instructional Cluster
Faculty POC: Prof Ron Levy
Tech POC: Emilio Gallachio
Specs: 18x2 AMD Athlon 2.2GHz
Vendor: Microway
OS: Red Hat AS 3
RAM/CPU: 2GB
Biomedical Engineering 
CPUs: 10
Purpose: Gene Analysis
Faculty POC: Prof Ioannis Androulakis
Tech POC: Stratos Loukidis
Specs: 5x2 Xeon 3.06GHz Blades
Vendor: Atipa
OS: RedHat ES
RAM/CPU: 4GB (Control); 2GB (Nodes)
Center for Advanced Biotechnology and Medicine 
CPUs: 20
Purpose: Structural Analysis of Proteins
Faculty POC: Prof Hunter Moseley
Tech POC: Yasushi Okiobo
Specs: 10x2 AMD Athlon MP 1900+ 1.6 GHz
Vendor: PSSCLabs
OS: Red Hat 7.3
RAM/CPU: 1GB
Center for Advanced Information Processing  
CPUs: 25
Purpose: Grid Testbed
Faculty POC: CAIP Faculty
Tech POC: Steve Carter
Specs: 25x1 UltraSPARC 2i333 MHz
Vendor: Sun Microsystems
OS: Solaris 9
RAM/CPU: 128MB
CPUs:  64
Purpose:  Simulations & Measurements of Custom Applications
Faculty POC:  Prof Manish Parashar
Tech POC:  Steve Carter
Specs:  64x1 PIV 1.7GHz
Vendor:  locally produced
OS:  RedHat 9.0
RAM/CPU:  512MB
CPUs:  16
Purpose:  Instruction and Research
Faculty POC:  Prof Manish Parashar
Tech POC:  Steve Carter
Specs:  8x2 PIII 500 MHz
Vendor:  Dell
OS:  RedHat 9.0
RAM/CPU:  512MB
CPUs:  16
Purpose:  General HPC (part of E10K, E12K Clusters)
Faculty POC:  CAIP Faculty
Tech POC:  Steve Carter
Specs:  8x2 AMD Opteron 1.8 GHz
Vendor:  Sun
OS:  Fedora
RAM/CPU:  4GB
Ceramics and Material Engineering  
CPUs: 80
Purpose: Garofalini Research Group Cluster
Faculty POC: Prof Stephen Garofalini
Tech POC: Prof Stephen Garofalini
Specs: 20x2 AMD Athlon MP 1.6 GHz
40x1 AMD Athlon MP 1.6 GHz
Vendor: Aspen
OS: Red Hat 7.3
RAM/CPU: Dual: 2GB; Single: 1GB
Chemical and Biochemical Engineering  
CPUs: 20
Purpose: Grad Student Research
Faculty POC: 
Tech POC: Kirk Tarabokia
Specs: 20x1 AMD Athlon 1.667GHz
Vendor: 
OS: RedHat 7.2
RAM/CPU: 1GB
Chemistry  
CPUs:  16
Purpose:  Electronic Structure Calculations
Faculty POC:  Prof Ron Levy
Tech POC:  Emilio Gallachio
Specs:  8x2 64bit Alpha833 MHz
Vendor:  PSSC Labs
OS:  Red Hat 7.1
RAM/CPU:  1GB
CPUs:  90
Purpose:  Protein Simulations
Faculty POC:  Prof Ron Levy
Tech POC:  Emilio Gallachio
Specs:  5x2 AMD Athlon 1.6-1.8 GHz
Vendor:  Microway
OS:  Red Hat AS 3
RAM/CPU:  1.5GB
CPUs:  32
Purpose:  Biomolecular Simulations
Faculty POC:  Prof Ron Levy
Tech POC:  Emilio Gallachio
Specs:  16x2 PIII 1 GHz
Vendor:  Arista
OS:  Red Hat 7.3
RAM/CPU:  768MB
CPUs:  100
Purpose:  Protein Simulations
Faculty POC:  Prof Ron Levy
Tech POC:  Emilio Gallachio
Specs:  50x2 AMD Athlon 2.2 GHz
Vendor:  Microway
OS:  Red Hat AS 3
RAM/CPU:  2GB
Environmental and Occupational Health Sciences Institute  
CPUs: 16
Purpose: Air Quality & Physiologically-Based Pharmacokinetic Modeling
Faculty POC: Prof Panos Georgopolous
Tech POC: Wei Li
Specs: 16x1 AMD 1800+ 1.53GHz
Vendor: Linux Networx
OS: RedHat Fedora 3
RAM/CPU: 512MB
Center for Environmental Prediction (CEP)  
CPUs:  12
Purpose:  Atmospheric Modeling
Faculty POC:  CEP Faculty
Tech POC:  Dana Price
Specs:  6x2 Xeon 2.8 GHz
Vendor:  Dell PE 2650
OS:  RedHat 7.2
RAM/CPU:  512MB
CPUs:  16
Purpose:  Atmospheric Modeling
Faculty POC:  CEP Faculty
Tech POC:  Dana Price
Specs:  16x1 PIII 933 MHz
Vendor:  Dell GX110
OS:  RedHat 7.2
RAM/CPU:  256MB
CPUs:  12
Purpose:  Atmospheric Modeling
Faculty POC:  CEP Faculty
Tech POC:  Dana Price
Specs:  12x1 PIII 1.4 GHz
Vendor:  Dell PE 1650
OS:  RedHat 7.2
RAM/CPU:  512MB
Institute of Marine and Coastal Sciences  
CPUs: 22
Purpose: Ocean Modeling
Faculty POC: 
Tech POC: John Evans
Specs: 11x2 AMD Opteron 250 2.4 GHz
Vendor: Penguin Computing
OS: Scyld Beowulf v29cz
RAM/CPU: 4GB
Laboratory of Computer Science Research  
CPUs: 48
Purpose: Computer Science Research and Teaching
Faculty POC: Don Smith
Tech POC: Don Watrous
Specs: 24x2 Xeon 2.8GHz
Vendor: IBM
OS: RedHat 9
RAM/CPU: 2GB
Mechanical & Aerospace Engineering  
CPUs: 64
Purpose: Knight Research Group Cluster
Faculty POC: Prof Doyle Knight
Tech POC: Prof Doyle Knight
Specs: 16x4 Xeon 500 MHz Xeon
Vendor: Dell
OS: Red Hat 7.2
RAM/CPU: 2 GB
Physics - High Energy Theory  
CPUs: 66
Purpose: Member of Fermi International World Consortium Supergrid project
Faculty POC: Terence Watts, watts@physics
Tech POC: Pieter Jacques
Specs: 33x2 AMD & PIV
Vendor: Various Vendors
OS: Red Hat 7.1 (mig to Scientific Linux)
RAM/CPU: 1GB
Physics & Astronomy  
CPUs:  192
Purpose:  Parallel & Testing Queues
Faculty POC: 
Tech POC:  Victor Udovenko
Specs:  26x2 Athlon 1800;70x2 Athlon 2000
Vendor:  CMC
OS:  SuSE 9.2
RAM/CPU:  2GB
CPUs:  16
Purpose:  Sellwood Research Group
Faculty POC:  Prof. J. Sellwood
Tech POC:  Victor Udovenko
Specs:  16x1 Athlon 1600
Vendor:  CMC
OS:  SuSE 8.2
RAM/CPU:  1.5GB
CPUs:  54
Purpose:  Serial Queue
Faculty POC: 
Tech POC:  Victor Udovenko
Specs:  27x2 Athlon 1800
Vendor:  CMC
OS:  SuSE 8.2
RAM/CPU:  2GB & 3GB (in 12 nodes)
CPUs:  62
Purpose:  Myrinet Queue
Faculty POC: 
Tech POC:  Victor Udovenko
Specs:  22x2 Athlon 1800; 9x2 Athlon2000
Vendor:  CMC
OS:  SuSE 9.0
RAM/CPU:  2GB
CPUs:  32
Purpose:  Opteron Queue
Faculty POC: 
Tech POC:  Victor Udovenko
Specs:  13x2 Opteron 246; 1x4 Opteron846
Vendor:  CMC - 8 Nodes;
Microway - 8 Nodes
OS:  SuSE 9.2
RAM/CPU:  2GB
CPUs:  128
Purpose:  Older Queue
Faculty POC: 
Tech POC:  Victor Udovenko
Specs:  64x2 PIII 1 GHz
Vendor:  CMC
OS:  SuSE 7.2
RAM/CPU:  2GB
CPUs:  32
Purpose:  Older Queue
Faculty POC: 
Tech POC:  Victor Udovenko
Specs: 32x1 PIII 800 MHz
Vendor:  CMC
OS:  SuSE 7.1
RAM/CPU:  1GB
CPUs:  48
Purpose:  Neuberger Research Group
Faculty POC:  Prof. Neuberger
Tech POC:  Victor Udovenko
Specs:  48x1 PIII 3GHz
Vendor:  CMC
OS:  SuSE 9.0
RAM/CPU:  2GB
Psychology Department (Newark)  
CPUs: 50
Purpose: RUMBA Research Group/Newark Campus Cluster
Faculty POC: Prof Stephen Hanson
Tech POC: Yaroslav Halchenko
Specs: 10x2 AMD Opteron 240 1.4 GHz; 15x2 AMD Opteron 242 1.6 GHz
Vendor: 
OS: Debian
RAM/CPU: Opteron 240: 5 GB; Opteron 242 6GB
Rutgers Business School (Newark)  
CPUs: 40
Purpose: Faculty Research
Faculty POC: RBS Computing Services Help Desk
Tech POC: Waqar Shaikh
Specs: Sun Ultra 5s
Vendor: Sun Microsystems
OS: Solaris 8
RAM/CPU: 512MB
School of Engineering  
CPUs:  16
Purpose:  MPI Mini Course
Faculty POC:  SOE
Tech POC:  Alexei Kotelnikov
Specs:  8x2 PIII 550 MHz
Vendor:  Custom
OS:  Debian Sarge 3.1
RAM/CPU:  512MB
CPUs:  104
Purpose:  Mphase I & II - Engineering Computational Cluster
Faculty POC:  SOE
Tech POC:  Alexei Kotelnikov
Specs:  44x2 AMD MP 1.6 GHz , 8x1 1.2GHz AMD Athlon 8x2 PIII 866 MHz
Vendor:  Aspen, Microway
OS:  Red Hat 7.3/ Debian Sarge 3.1
RAM/CPU: Aspen 1GB;
Microway Athlon 512MB;
MicrowayPIII 512MB
CPUs:  16
Purpose:  LinuxCourse Instructional Cluster
Faculty POC:  SOE
Tech POC:  Alexei Kotelnikov
Specs:  16x1 AMD Athlon 950 MHz
Vendor:  (Custom)
OS:  Debian Sarge 3.1
RAM/CPU:  256MB
Wireless Information Network Laboratory  
CPUs:  10
Purpose:  Department Use
Faculty POC: 
Tech POC:  Ivan Seskar
Specs:  5x2 Xeon 2.8 GHz
Vendor: 
OS:  (OS)
RAM/CPU:  RedHat (Moving to Debian)
CPUs:  10
Purpose:  Department Use
Faculty POC: 
Tech POC:  Ivan Seskar
Specs:  5x2 Xeon 2.8 GHz
Vendor: 
OS:  Debian
RAM/CPU: